Software for protein works and Western blotting







AUDENS

It says: AUDENS is a tool for automated de novo sequencing of peptides. It has a flexible preprocessing module which is designed to distinguish between signal and noise peaks.

License: Freeware, but based on Java

http://www.ti.inf.ethz.ch/pw/software/audens/



Gromacs

It says: GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles..

License: Freeware, source code available

http://www.gromacs.org



ImageJ

You can perform densitometric analysis (analysing western blots) if you follow this method.

License: Freeware, but based on Java

http://imagej.nih.gov/ij/



ImageLab

Software for 1-D data analysis, for quantification of Western and Southern blots.

License: Commercial, can be downloaded free after registration and used in basic mode

http://www.bio-rad.com/de-de/product/image-lab-software



Image Studio Lite

It says: Free Western Blot Analysis Software.

License: Free, but registration required for download

http://www.licor.com/bio/products/software/image_studio_lite/index.html



iMol

It says: iMol is a free molecular visualization application for Mac OS X operating system.

License: Freeware, but last update was 2007

http://www.pirx.com/iMol/index.shtml



LabImage

It says: The LabImage Software Platform provides a unique approach for all bio-imaging needs from image analysis up to automation and device controlling. LabImage provides the world only Imaging Application Pool.

License: Commercial, free Trial

http://www.kapelan-bioimaging.com



Protein-ms

It says: Tools for mass spectrometry, especially for protein mass spectrometry and proteomics.

License: Freeware, Source code available.

http://sourceforge.net/projects/protms/



PyMOL

It says: PyMOL is a user-sponsored molecular visualization system on an open-source foundation.

License: Only old versions are free for academic use, new versions for paid subscribers only

http://www.pymol.org



Swiss-PdbViewer

It says: Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time.

License: Freeware

http://spdbv.vital-it.ch



VMD

It says: VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

License: Freeware

http://www.ks.uiuc.edu/Research/vmd/